HL_7CPU_023

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7CPU|1|L5|A|1444, 7CPU|1|L5|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_023 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0998

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7CPU|1|L5|G|1441
7CPU|1|L5|C|1442
7CPU|1|L5|G|1443
7CPU|1|L5|A|1444
7CPU|1|L5|A|1445
7CPU|1|L5|A|1446
7CPU|1|L5|G|1447
7CPU|1|L5|A|1448
7CPU|1|L5|C|1449

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37