HL_7CPU_024

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7CPU|1|L5|C|1490, 7CPU|1|L5|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_024 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0866

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7CPU|1|L5|C|1489
7CPU|1|L5|C|1490
7CPU|1|L5|U|1491
7CPU|1|L5|C|1492
7CPU|1|L5|A|1493
7CPU|1|L5|G|1494

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a