HL_7CPU_038

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGCCGCGAG

Length

9 nucleotides

Bulged bases

7CPU|1|L5|C|2318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_038 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3919

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7CPU|1|L5|C|2315
7CPU|1|L5|G|2316
7CPU|1|L5|C|2317
7CPU|1|L5|C|2318
7CPU|1|L5|G|2319
7CPU|1|L5|C|2320
7CPU|1|L5|G|2321
7CPU|1|L5|A|2322
7CPU|1|L5|G|2323

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27