HL_7CPU_042

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

7CPU|1|L5|U|2461, 7CPU|1|L5|C|2463, 7CPU|1|L5|G|2465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_042 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3364

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

7CPU|1|L5|C|2458
7CPU|1|L5|G|2459
7CPU|1|L5|G|2460
7CPU|1|L5|U|2461
7CPU|1|L5|U|2462
7CPU|1|L5|C|2463
7CPU|1|L5|C|2464
7CPU|1|L5|G|2465
7CPU|1|L5|G|2466

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain LX

60S ribosomal protein L23a