HL_7CPU_063

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

7CPU|1|L5|U|4007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_063 not in the Motif Atlas

Geometric match to HL_4V83_139

Geometric discrepancy: 0.2971

The information below is about HL_4V83_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

7CPU|1|L5|U|4005
7CPU|1|L5|U|4006
7CPU|1|L5|U|4007
7CPU|1|L5|G|4008
7CPU|1|L5|G|4009
7CPU|1|L5|G|4010
7CPU|1|L5|U|4011
7CPU|1|L5|U|4012
7CPU|1|L5|U|4013
7CPU|1|L5|U|4014
7CPU|1|L5|A|4015

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a