HL_7CPU_065

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7CPU|1|L5|G|4128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_065 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0857

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7CPU|1|L5|A|4127
7CPU|1|L5|G|4128
7CPU|1|L5|C|4129
7CPU|1|L5|A|4130
7CPU|1|L5|G|4131
7CPU|1|L5|A|4132
7CPU|1|L5|A|4133
7CPU|1|L5|U|4134

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40