HL_7CPU_074

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

7CPU|1|L5|C|4671, 7CPU|1|L5|C|4672, 7CPU|1|L5|C|4673, 7CPU|1|L5|U|4674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_074 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3014

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7CPU|1|L5|C|4669
7CPU|1|L5|U|4670
7CPU|1|L5|C|4671
7CPU|1|L5|C|4672
7CPU|1|L5|C|4673
7CPU|1|L5|U|4674
7CPU|1|L5|C|4675
7CPU|1|L5|G|4676

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LU

60S ribosomal protein L22

Chain SI

40S ribosomal protein S8