HL_7CPU_093

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_093 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1333

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7CPU|1|S2|C|619
7CPU|1|S2|A|620
7CPU|1|S2|G|621
7CPU|1|S2|C|622
7CPU|1|S2|C|623
7CPU|1|S2|G|624

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SX

40S ribosomal protein S23