HL_7CPU_096

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

7CPU|1|S2|G|837, 7CPU|1|S2|C|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_096 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2979

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7CPU|1|S2|C|834
7CPU|1|S2|C|835
7CPU|1|S2|C|836
7CPU|1|S2|G|837
7CPU|1|S2|A|838
7CPU|1|S2|G|839
7CPU|1|S2|C|840
7CPU|1|S2|C|841
7CPU|1|S2|G|842

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24