HL_7CPU_102

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_102 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1039

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7CPU|1|S2|G|1142
7CPU|1|S2|G|1143
7CPU|1|S2|A|1144
7CPU|1|S2|A|1145
7CPU|1|S2|A|1146
7CPU|1|S2|C|1147

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26