HL_7CPV_021

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7CPV|1|L5|U|1410, 7CPV|1|L5|A|1414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_021 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0801

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7CPV|1|L5|A|1407
7CPV|1|L5|C|1408
7CPV|1|L5|G|1409
7CPV|1|L5|U|1410
7CPV|1|L5|G|1411
7CPV|1|L5|C|1412
7CPV|1|L5|A|1413
7CPV|1|L5|A|1414
7CPV|1|L5|A|1415
7CPV|1|L5|U|1416

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37