HL_7CPV_043
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 7CPV|1|L5|C|2548, 7CPV|1|L5|G|2550, 7CPV|1|L5|A|2552
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7CPV_043 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.1035
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
7CPV|1|L5|C|2546
7CPV|1|L5|G|2547
7CPV|1|L5|C|2548
7CPV|1|L5|A|2549
7CPV|1|L5|G|2550
7CPV|1|L5|C|2551
7CPV|1|L5|A|2552
7CPV|1|L5|G|2553
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- Ribosomal protein L39-like
Coloring options: