HL_7CPV_048

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

7CPV|1|L5|A|3299, 7CPV|1|L5|A|3300, 7CPV|1|L5|U|3301, 7CPV|1|L5|A|3305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_048 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1624

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7CPV|1|L5|U|3296
7CPV|1|L5|U|3297
7CPV|1|L5|U|3298
7CPV|1|L5|A|3299
7CPV|1|L5|A|3300
7CPV|1|L5|U|3301
7CPV|1|L5|U|3302
7CPV|1|L5|A|3303
7CPV|1|L5|A|3304
7CPV|1|L5|A|3305
7CPV|1|L5|A|3306

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37