HL_7CPV_106

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7CPV|1|S2|U|1372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_106 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1587

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7CPV|1|S2|G|1367
7CPV|1|S2|U|1368
7CPV|1|S2|U|1369
7CPV|1|S2|A|1370
7CPV|1|S2|A|1371
7CPV|1|S2|U|1372
7CPV|1|S2|U|1373
7CPV|1|S2|C|1374

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17