HL_7CPV_120

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7CPV|1|L5|G|4128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_120 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.1028

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7CPV|1|L5|A|4127
7CPV|1|L5|G|4128
7CPV|1|L5|C|4129
7CPV|1|L5|A|4130
7CPV|1|L5|G|4131
7CPV|1|L5|A|4132
7CPV|1|L5|A|4133
7CPV|1|L5|U|4134

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40