HL_7D4I_011

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7D4I|1|SA|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D4I_011 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.5118

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7D4I|1|SA|G|330
7D4I|1|SA|A|331
7D4I|1|SA|U|332
7D4I|1|SA|A|333
7D4I|1|SA|G|334
7D4I|1|SA|U|335
7D4I|1|SA|G|336
7D4I|1|SA|G|337
7D4I|1|SA|C|338

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A