HL_7D5S_011

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D5S_011 not in the Motif Atlas

Geometric match to HL_7RQB_022

Geometric discrepancy: 0.2119

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7D5S|1|5A|U|514
7D5S|1|5A|G|515
7D5S|1|5A|U|516
7D5S|1|5A|A|517
7D5S|1|5A|A|518
7D5S|1|5A|A|519
7D5S|1|5A|A|520
7D5S|1|5A|G|521

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5I

Protein SOF1