HL_7D5S_016

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D5S_016 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1595

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7D5S|1|SA|A|900
7D5S|1|SA|G|901
7D5S|1|SA|G|902
7D5S|1|SA|U|903
7D5S|1|SA|G|904
7D5S|1|SA|A|905
7D5S|1|SA|A|906
7D5S|1|SA|A|907
7D5S|1|SA|U|908
7D5S|1|SA|U|909

Current chains

Chain SA

18S rRNA

Nearby chains

Chain B3

U3 small nucleolar RNA-associated protein 13

Chain RC

KRR1 small subunit processome component

Chain SP

40S ribosomal protein S14-A