HL_7D5S_018

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7D5S|1|SA|U|1004

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D5S_018 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.4863

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7D5S|1|SA|G|997
7D5S|1|SA|A|998
7D5S|1|SA|U|999
7D5S|1|SA|C|1000
7D5S|1|SA|A|1001
7D5S|1|SA|G|1002
7D5S|1|SA|A|1003
7D5S|1|SA|U|1004
7D5S|1|SA|A|1005
7D5S|1|SA|C|1006
7D5S|1|SA|C|1007

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RD

rRNA biogenesis protein RRP5

Chain RE

U3 small nucleolar RNA-associated protein 22