HL_7D5T_008

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

7D5T|1|SA|A|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D5T_008 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3058

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7D5T|1|SA|U|450
7D5T|1|SA|A|451
7D5T|1|SA|A|452
7D5T|1|SA|U|453
7D5T|1|SA|U|454
7D5T|1|SA|C|455
7D5T|1|SA|A|456

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A