HL_7D63_006

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D63_006 not in the Motif Atlas

Geometric match to HL_7RQB_022

Geometric discrepancy: 0.2118

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7D63|1|5A|U|514
7D63|1|5A|G|515
7D63|1|5A|U|516
7D63|1|5A|A|517
7D63|1|5A|A|518
7D63|1|5A|A|519
7D63|1|5A|A|520
7D63|1|5A|G|521

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5I

Protein SOF1

Chain RP

U3 small nucleolar RNA-associated protein 20