3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
GUAAUUC
Length
7 nucleotides
Bulged bases
7D63|1|SA|U|159
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7D63_008 not in the Motif Atlas
Homologous match to HL_4V88_188
Geometric discrepancy: 0.3761
The information below is about HL_4V88_188
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7D63|1|SA|G|154
7D63|1|SA|U|155
7D63|1|SA|A|156
7D63|1|SA|A|157
7D63|1|SA|U|158
7D63|1|SA|U|159
7D63|1|SA|C|160

Current chains

Chain SA
18S rRNA

Nearby chains

Chain RL
RNA cytidine acetyltransferase
Chain SH
40S ribosomal protein S6-A

Coloring options:


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