HL_7D63_014
3D structure
- PDB id
- 7D63 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.3 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 7D63|1|SA|A|400, 7D63|1|SA|C|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D63_014 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.5589
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7D63|1|SA|C|393
7D63|1|SA|C|394
7D63|1|SA|U|395
7D63|1|SA|G|396
7D63|1|SA|A|397
7D63|1|SA|G|398
7D63|1|SA|A|399
7D63|1|SA|A|400
7D63|1|SA|A|401
7D63|1|SA|C|402
7D63|1|SA|G|403
7D63|1|SA|G|404
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RA
- Ribosome biogenesis protein ENP2
- Chain SH
- 40S ribosomal protein S6-A
- Chain SJ
- 40S ribosomal protein S8-A
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