3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
AGGUGAAAUU
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7D63_021 not in the Motif Atlas
Homologous match to HL_4V88_206
Geometric discrepancy: 0.1515
The information below is about HL_4V88_206
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

7D63|1|SA|A|900
7D63|1|SA|G|901
7D63|1|SA|G|902
7D63|1|SA|U|903
7D63|1|SA|G|904
7D63|1|SA|A|905
7D63|1|SA|A|906
7D63|1|SA|A|907
7D63|1|SA|U|908
7D63|1|SA|U|909

Current chains

Chain SA
18S rRNA

Nearby chains

Chain B3
U3 small nucleolar RNA-associated protein 13
Chain RT
Pno1
Chain SP
40S ribosomal protein S14-A

Coloring options:


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