HL_7D63_027

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D63_027 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.3375

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7D63|1|SA|C|1501
7D63|1|SA|G|1502
7D63|1|SA|A|1503
7D63|1|SA|G|1504
7D63|1|SA|A|1505
7D63|1|SA|G|1506

Current chains

Chain SA

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S18-A

Chain SU

40S ribosomal protein S19-A