HL_7D63_032

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GGUGAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D63_032 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3372

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7D63|1|SA|G|1777
7D63|1|SA|G|1778
7D63|1|SA|U|1779
7D63|1|SA|G|1780
7D63|1|SA|A|1781
7D63|1|SA|A|1782
7D63|1|SA|C|1783
7D63|1|SA|C|1784

Current chains

Chain SA

18S rRNA

Nearby chains