HL_7D7Z_001

3D structure

PDB id

7D7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+), soaked in Mn2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D7Z_001 not in the Motif Atlas

Geometric match to HL_1HMH_003

Geometric discrepancy: 0.0679

The information below is about HL_1HMH_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7D7Z|1|A|C|27
7D7Z|1|A|G|28
7D7Z|1|A|A|29
7D7Z|1|A|A|30
7D7Z|1|A|A|31
7D7Z|1|A|G|32

Current chains

Chain A

18GAAA(52-MER)

Nearby chains