HL_7D80_011
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 7D80|1|A|G|329, 7D80|1|A|A|330, 7D80|1|A|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D80_011 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.1463
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
7D80|1|A|G|327
7D80|1|A|U|328
7D80|1|A|G|329
7D80|1|A|A|330
7D80|1|A|C|331
7D80|1|A|A|332
7D80|1|A|G|333
7D80|1|A|C|334
7D80|1|A|C|335
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain s
- 50S ribosomal protein L24
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