HL_7D80_036

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7D80|1|A|A|1453, 7D80|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_036 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.2107

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7D80|1|A|C|1451
7D80|1|A|G|1452
7D80|1|A|A|1453
7D80|1|A|C|1454
7D80|1|A|G|1455
7D80|1|A|G|1456
7D80|1|A|U|1457
7D80|1|A|U|1458
7D80|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17