HL_7D80_048
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 7D80|1|A|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D80_048 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.3143
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7D80|1|A|G|1910
7D80|1|A|U|1911
7D80|1|A|A|1912
7D80|1|A|A|1913
7D80|1|A|C|1914
7D80|1|A|U|1915
7D80|1|A|A|1916
7D80|1|A|U|1917
7D80|1|A|A|1918
7D80|1|A|A|1919
7D80|1|A|C|1920
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain Z
- Transfer RNA; tRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: