HL_7D80_055

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_055 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1804

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7D80|1|A|G|2303
7D80|1|A|G|2304
7D80|1|A|U|2305
7D80|1|A|C|2306
7D80|1|A|G|2307
7D80|1|A|G|2308
7D80|1|A|A|2309
7D80|1|A|C|2310
7D80|1|A|A|2311
7D80|1|A|U|2312
7D80|1|A|C|2313

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L5