HL_7D80_075

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7D80|1|B|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_075 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1952

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7D80|1|B|G|259
7D80|1|B|G|260
7D80|1|B|U|261
7D80|1|B|A|262
7D80|1|B|A|263
7D80|1|B|C|264
7D80|1|B|G|265
7D80|1|B|G|266
7D80|1|B|C|267

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S17

Chain U

30S ribosomal protein S20