HL_7D80_080

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

7D80|1|B|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_080 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3809

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7D80|1|B|C|418
7D80|1|B|C|419
7D80|1|B|U|420
7D80|1|B|U|421
7D80|1|B|C|422
7D80|1|B|G|423
7D80|1|B|G|424
7D80|1|B|G|425

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S3

Chain E

30S ribosomal protein S4