HL_7D80_131

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

7D80|1|A|U|545, 7D80|1|A|U|546, 7D80|1|A|A|547, 7D80|1|A|G|548, 7D80|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_131 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.4806

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7D80|1|A|G|543
7D80|1|A|C|544
7D80|1|A|U|545
7D80|1|A|U|546
7D80|1|A|A|547
7D80|1|A|G|548
7D80|1|A|G|549
7D80|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain q

50S ribosomal protein L21