HL_7DCO_005
3D structure
- PDB id
- 7DCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGCAUAA
- Length
- 7 nucleotides
- Bulged bases
- 7DCO|1|F|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7DCO_005 not in the Motif Atlas
- Homologous match to HL_6ASO_001
- Geometric discrepancy: 0.3219
- The information below is about HL_6ASO_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
7DCO|1|F|U|70
7DCO|1|F|G|71
7DCO|1|F|C|72
7DCO|1|F|A|73
7DCO|1|F|U|74
7DCO|1|F|A|75
7DCO|1|F|A|76
Current chains
- Chain F
- U6 snRNA
Nearby chains
- Chain A
- PRP8 isoform 1
- Chain B
- U5 spliceosomal RNA; U5 snRNA
- Chain G
- pre-mRNA
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain T
- HLJ1_G0054350.mRNA.1.CDS.1
Coloring options: