HL_7DUI_006

3D structure

PDB id

7DUI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

7DUI|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUI_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0794

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7DUI|1|A|G|259
7DUI|1|A|G|260
7DUI|1|A|U|261
7DUI|1|A|A|262
7DUI|1|A|A|263
7DUI|1|A|U|264
7DUI|1|A|G|265
7DUI|1|A|G|266
7DUI|1|A|C|267

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20