HL_7DUK_017

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7DUK|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUK_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1358

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7DUK|1|A|G|786
7DUK|1|A|A|787
7DUK|1|A|U|788
7DUK|1|A|U|789
7DUK|1|A|A|790
7DUK|1|A|G|791
7DUK|1|A|A|792
7DUK|1|A|U|793
7DUK|1|A|A|794
7DUK|1|A|C|795
7DUK|1|A|C|796

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain K

30S ribosomal protein S11