HL_7F0D_003

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_003 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.2211

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7F0D|1|A|A|137
7F0D|1|A|G|138
7F0D|1|A|U|139
7F0D|1|A|G|140
7F0D|1|A|A|141
7F0D|1|A|U|142
7F0D|1|A|G|143
7F0D|1|A|U|144

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23