HL_7F0D_012

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

7F0D|1|A|G|412, 7F0D|1|A|A|413, 7F0D|1|A|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_012 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1357

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7F0D|1|A|G|410
7F0D|1|A|U|411
7F0D|1|A|G|412
7F0D|1|A|A|413
7F0D|1|A|G|414
7F0D|1|A|A|415
7F0D|1|A|G|416
7F0D|1|A|C|417
7F0D|1|A|C|418

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24