HL_7F0D_014

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

7F0D|1|A|G|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_014 not in the Motif Atlas

Geometric match to HL_4WF9_014

Geometric discrepancy: 0.1334

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7F0D|1|A|G|499
7F0D|1|A|G|500
7F0D|1|A|A|501
7F0D|1|A|C|502
7F0D|1|A|C|503
7F0D|1|A|A|504
7F0D|1|A|C|505
7F0D|1|A|C|506

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15