HL_7F0D_024

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUGAAGAC

Length

10 nucleotides

Bulged bases

7F0D|1|A|U|876, 7F0D|1|A|G|880, 7F0D|1|A|A|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_024 not in the Motif Atlas

Geometric match to HL_7A0S_022

Geometric discrepancy: 0.1422

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

7F0D|1|A|G|873
7F0D|1|A|G|874
7F0D|1|A|U|875
7F0D|1|A|U|876
7F0D|1|A|G|877
7F0D|1|A|A|878
7F0D|1|A|A|879
7F0D|1|A|G|880
7F0D|1|A|A|881
7F0D|1|A|C|882

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 2

50S ribosomal protein L34

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22