HL_7F0D_029

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_029 not in the Motif Atlas

Geometric match to HL_4WF9_028

Geometric discrepancy: 0.1641

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7F0D|1|A|G|1107
7F0D|1|A|A|1108
7F0D|1|A|A|1109
7F0D|1|A|A|1110
7F0D|1|A|C|1111
7F0D|1|A|A|1112
7F0D|1|A|G|1113
7F0D|1|A|C|1114

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain Z

50S ribosomal protein L30