HL_7F0D_037

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

7F0D|1|A|U|1527, 7F0D|1|A|U|1528

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_037 not in the Motif Atlas

Geometric match to HL_4WF9_035

Geometric discrepancy: 0.1439

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7F0D|1|A|G|1520
7F0D|1|A|U|1521
7F0D|1|A|U|1522
7F0D|1|A|G|1523
7F0D|1|A|A|1524
7F0D|1|A|U|1525
7F0D|1|A|A|1526
7F0D|1|A|U|1527
7F0D|1|A|U|1528
7F0D|1|A|C|1529

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23