HL_7F0D_048

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

7F0D|1|A|A|2014, 7F0D|1|A|C|2015, 7F0D|1|A|U|2016, 7F0D|1|A|A|2020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_048 not in the Motif Atlas

Geometric match to HL_5J7L_178

Geometric discrepancy: 0.1064

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|U|2011
7F0D|1|A|U|2012
7F0D|1|A|U|2013
7F0D|1|A|A|2014
7F0D|1|A|C|2015
7F0D|1|A|U|2016
7F0D|1|A|A|2017
7F0D|1|A|A|2018
7F0D|1|A|A|2019
7F0D|1|A|A|2020
7F0D|1|A|A|2021

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2