HL_7F0D_053

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

7F0D|1|A|A|2268, 7F0D|1|A|A|2269, 7F0D|1|A|G|2270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_053 not in the Motif Atlas

Geometric match to HL_7RQB_050

Geometric discrepancy: 0.1589

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|G|2265
7F0D|1|A|U|2266
7F0D|1|A|A|2267
7F0D|1|A|A|2268
7F0D|1|A|A|2269
7F0D|1|A|G|2270
7F0D|1|A|A|2271
7F0D|1|A|U|2272
7F0D|1|A|G|2273
7F0D|1|A|C|2274

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain R

50S ribosomal protein L21