HL_7F0D_055

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUGAAUCGG

Length

10 nucleotides

Bulged bases

7F0D|1|A|G|2448, 7F0D|1|A|A|2449, 7F0D|1|A|U|2451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_055 not in the Motif Atlas

Homologous match to HL_4WF9_069

Geometric discrepancy: 0.5559

The information below is about HL_4WF9_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|C|2445
7F0D|1|A|C|2446
7F0D|1|A|U|2447
7F0D|1|A|G|2448
7F0D|1|A|A|2449
7F0D|1|A|A|2450
7F0D|1|A|U|2451
7F0D|1|A|C|2452
7F0D|1|A|G|2453
7F0D|1|A|G|2454

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28