HL_7F0D_062

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGUGGAAG

Length

10 nucleotides

Bulged bases

7F0D|1|A|A|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_062 not in the Motif Atlas

Geometric match to HL_5J7L_192

Geometric discrepancy: 0.1481

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|C|2642
7F0D|1|A|G|2643
7F0D|1|A|A|2644
7F0D|1|A|G|2645
7F0D|1|A|U|2646
7F0D|1|A|G|2647
7F0D|1|A|G|2648
7F0D|1|A|A|2649
7F0D|1|A|A|2650
7F0D|1|A|G|2651

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15