HL_7F0D_070

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUUGGU

Length

7 nucleotides

Bulged bases

7F0D|1|A|U|3034

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_070 not in the Motif Atlas

Geometric match to HL_5J7L_014

Geometric discrepancy: 0.2235

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7F0D|1|A|A|3032
7F0D|1|A|C|3033
7F0D|1|A|U|3034
7F0D|1|A|U|3035
7F0D|1|A|G|3036
7F0D|1|A|G|3037
7F0D|1|A|U|3038

Current chains

Chain A

23S rRNA

Nearby chains