HL_7F0D_075
3D structure
- PDB id
- 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGGAGGCUG
- Length
- 10 nucleotides
- Bulged bases
- 7F0D|1|A|G|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7F0D_075 not in the Motif Atlas
- Homologous match to HL_4WF9_067
- Geometric discrepancy: 0.4958
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
7F0D|1|A|U|59
7F0D|1|A|G|60
7F0D|1|A|G|61
7F0D|1|A|G|62
7F0D|1|A|A|63
7F0D|1|A|G|64
7F0D|1|A|G|65
7F0D|1|A|C|66
7F0D|1|A|U|67
7F0D|1|A|G|68
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain T
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L29
Coloring options: