HL_7F0D_078

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACGGCAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_078 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.5155

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7F0D|1|A|G|2542
7F0D|1|A|A|2543
7F0D|1|A|C|2544
7F0D|1|A|G|2545
7F0D|1|A|G|2546
7F0D|1|A|C|2547
7F0D|1|A|A|2548
7F0D|1|A|A|2549
7F0D|1|A|U|2550

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5